Publications

Protein science : a publication of the Protein Society

Halogen bonds between ligands and proteins: Can we use them in validation?

01-11-2025

Trends in cell biology

Unlocking the signaling potential of GPI-anchored proteins through lipolytic cleavage.

01-09-2025

Protein science : a publication of the Protein Society

DSSP 4: FAIR annotation of protein secondary structure.

01-08-2025

Molecular cell

Condensin II activation by M18BP1.

17-07-2025

Science (New York, N.Y.)

Zincore, an atypical coregulator, binds zinc finger transcription factors to control gene expression.

03-07-2025

Bioorganic & medicinal chemistry

Design, Synthesis, and Biological Implications of Autotaxin inhibitors with a Three-Point lock binding mode.

01-07-2025

bioRxiv : the preprint server for biology

A functionally validated TCR-pMHC database for TCR specificity model development.

12-05-2025

Cell reports

SRBD1, a highly conserved gene required for chromosome individualization.

22-04-2025

Journal of structural biology

JBP1 and JBP3 have conserved structures but different affinity to base-J.

01-03-2025

FEBS letters

Decoding microtubule detyrosination: enzyme families, structures, and functional implications.

01-06-2024

Journal of cell science

Caskin2 is a novel talin- and Abi1-binding protein that promotes cell motility.

01-05-2024

Protein science : a publication of the Protein Society

Conserved proline residues prevent dimerization and aggregation in the β-lactamase BlaC.

01-04-2024

ACS chemical biology

Targeting the Main Protease (M^pro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies.

16-02-2024

Nature reviews. Molecular cell biology

Challenges and opportunities in macromolecular structure determination.

01-01-2024

Life science alliance

Distant sequence regions of JBP1 contribute to J-DNA binding.

01-09-2023

Acta crystallographica. Section D, Structural biology

The CCP4 suite: integrative software for macromolecular crystallography.

01-06-2023

Journal of visualized experiments : JoVE

Extracting Modified Microtubules from Mammalian Cells to Study Microtubule-Protein Complexes by Cryo-Electron Microscopy.

03-03-2023

Nature methods

AlphaFill: enriching AlphaFold models with ligands and cofactors.

01-02-2023

Cell chemical biology

Autotaxin facilitates selective LPA receptor signaling.

19-01-2023

Journal of structural biology

Crystal structure of the phospholipase A and acyltransferase 4 (PLAAT4) catalytic domain.

01-12-2022

The Journal of cell biology

Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin.

07-11-2022

EMBO molecular medicine

A type IV Autotaxin inhibitor ameliorates acute liver injury and nonalcoholic steatohepatitis.

07-09-2022

Nature

Author Correction: Tryptophan depletion results in tryptophan-to-phenylalanine substitutants.

01-08-2022

Science (New York, N.Y.)

Posttranslational modification of microtubules by the MATCAP detyrosinase.

20-05-2022

Frontiers in pharmacology

Small Molecule Inhibitor Targeting CDT1/Geminin Protein Complex Promotes DNA Damage and Cell Death in Cancer Cells.

14-05-2022

Journal of medicinal chemistry

Structure-Based Design of a Novel Class of Autotaxin Inhibitors Based on Endogenous Allosteric Modulators.

28-04-2022

Nature

Tryptophan depletion results in tryptophan-to-phenylalanine substitutants.

01-03-2022

The Journal of biological chemistry

Structure and function of the ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family: Tidying up diversity.

01-02-2022

Proteins

Target highlights in CASP14: Analysis of models by structure providers.

01-12-2021

Cell reports

Autotaxin impedes anti-tumor immunity by suppressing chemotaxis and tumor infiltration of CD8⁺ T cells.

16-11-2021

Journal of visualized experiments : JoVE

iNEXT-Discovery and Instruct-ERIC: Integrating High-End Services for Translational Research in Structural Biology.

16-11-2021

EMBO reports

AI revolutions in biology: The joys and perils of AlphaFold.

04-11-2021

Journal of medicinal chemistry

Imaging Autotaxin In Vivo with ¹⁸F-Labeled Positron Emission Tomography Ligands.

28-10-2021

The FEBS journal

Conserved residues Glu37 and Trp229 play an essential role in protein folding of β-lactamase.

01-10-2021

Acta crystallographica. Section D, Structural biology

New restraints and validation approaches for nucleic acid structures in PDB-REDO.

01-09-2021

Acta crystallographica. Section D, Structural biology

CCD²: design constructs for protein expression, the easy way.

01-08-2021

Biochemistry

The G132S Mutation Enhances the Resistance of Mycobacterium tuberculosis β-Lactamase against Sulbactam.

20-07-2021

Antimicrobial agents and chemotherapy

Two β-Lactamase Variants with Reduced Clavulanic Acid Inhibition Display Different Millisecond Dynamics.

16-07-2021

Journal of visualized experiments : JoVE

Nano-Differential Scanning Fluorimetry for Screening in Fragment-based Lead Discovery.

16-05-2021

Acta crystallographica. Section D, Structural biology

LAHMA: structure analysis through local annotation of homology-matched amino acids.

01-01-2021

Analytical biochemistry

Quantitative LC-MS/MS analysis of 5-hydroxymethyl-2'-deoxyuridine to monitor the biological activity of J-binding protein.

01-12-2020

Structure (London, England : 1993)

A Global Ramachandran Score Identifies Protein Structures with Unlikely Stereochemistry.

03-11-2020

F1000Research

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community).

23-06-2020

Journal of cell science

Sequence-dependent trafficking and activity of GDE2, a GPI-specific phospholipase promoting neuronal differentiation.

10-02-2020

Cancers

The Structural Binding Mode of the Four Autotaxin Inhibitor Types that Differentially Affect Catalytic and Non-Catalytic Functions.

16-10-2019

The Journal of biological chemistry

The domain architecture of the protozoan protein J-DNA-binding protein 1 suggests synergy between base J DNA binding and thymidine hydroxylase activity.

23-08-2019

Nature structural & molecular biology

Crystal structure of the tubulin tyrosine carboxypeptidase complex VASH1-SVBP.

01-07-2019

Acta crystallographica. Section D, Structural biology

Building and rebuilding N-glycans in protein structure models.

01-04-2019

Proteins

A crystal structure of the human protein kinase Mps1 reveals an ordered conformation of the activation loop.

01-04-2019

Journal of structural biology: X

West-Life: A Virtual Research Environment for structural biology.

26-02-2019

Halogen bonds between ligands and proteins: Can we use them in validation?

Unlocking the signaling potential of GPI-anchored proteins through lipolytic cleavage.

DSSP 4: FAIR annotation of protein secondary structure.

Condensin II activation by M18BP1.

Zincore, an atypical coregulator, binds zinc finger transcription factors to control gene expression.

Design, Synthesis, and Biological Implications of Autotaxin inhibitors with a Three-Point lock binding mode.

A functionally validated TCR-pMHC database for TCR specificity model development.

SRBD1, a highly conserved gene required for chromosome individualization.

JBP1 and JBP3 have conserved structures but different affinity to base-J.

Decoding microtubule detyrosination: enzyme families, structures, and functional implications.

Caskin2 is a novel talin- and Abi1-binding protein that promotes cell motility.

Conserved proline residues prevent dimerization and aggregation in the β-lactamase BlaC.

Targeting the Main Protease (Mpro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies.

Challenges and opportunities in macromolecular structure determination.

Distant sequence regions of JBP1 contribute to J-DNA binding.

The CCP4 suite: integrative software for macromolecular crystallography.

Extracting Modified Microtubules from Mammalian Cells to Study Microtubule-Protein Complexes by Cryo-Electron Microscopy.

AlphaFill: enriching AlphaFold models with ligands and cofactors.

Autotaxin facilitates selective LPA receptor signaling.

Crystal structure of the phospholipase A and acyltransferase 4 (PLAAT4) catalytic domain.

Conformational transitions of the Spindly adaptor underlie its interaction with Dynein and Dynactin.

A type IV Autotaxin inhibitor ameliorates acute liver injury and nonalcoholic steatohepatitis.

Author Correction: Tryptophan depletion results in tryptophan-to-phenylalanine substitutants.

Posttranslational modification of microtubules by the MATCAP detyrosinase.

Small Molecule Inhibitor Targeting CDT1/Geminin Protein Complex Promotes DNA Damage and Cell Death in Cancer Cells.

Structure-Based Design of a Novel Class of Autotaxin Inhibitors Based on Endogenous Allosteric Modulators.

Tryptophan depletion results in tryptophan-to-phenylalanine substitutants.

Structure and function of the ecto-nucleotide pyrophosphatase/phosphodiesterase (ENPP) family: Tidying up diversity.

Target highlights in CASP14: Analysis of models by structure providers.

Autotaxin impedes anti-tumor immunity by suppressing chemotaxis and tumor infiltration of CD8+ T cells.

iNEXT-Discovery and Instruct-ERIC: Integrating High-End Services for Translational Research in Structural Biology.

AI revolutions in biology: The joys and perils of AlphaFold.

Imaging Autotaxin In Vivo with 18F-Labeled Positron Emission Tomography Ligands.

Conserved residues Glu37 and Trp229 play an essential role in protein folding of β-lactamase.

New restraints and validation approaches for nucleic acid structures in PDB-REDO.

CCD2: design constructs for protein expression, the easy way.

The G132S Mutation Enhances the Resistance of Mycobacterium tuberculosis β-Lactamase against Sulbactam.

Two β-Lactamase Variants with Reduced Clavulanic Acid Inhibition Display Different Millisecond Dynamics.

Nano-Differential Scanning Fluorimetry for Screening in Fragment-based Lead Discovery.

LAHMA: structure analysis through local annotation of homology-matched amino acids.

Quantitative LC-MS/MS analysis of 5-hydroxymethyl-2'-deoxyuridine to monitor the biological activity of J-binding protein.

A Global Ramachandran Score Identifies Protein Structures with Unlikely Stereochemistry.

A community proposal to integrate structural bioinformatics activities in ELIXIR (3D-Bioinfo Community).

Sequence-dependent trafficking and activity of GDE2, a GPI-specific phospholipase promoting neuronal differentiation.

The Structural Binding Mode of the Four Autotaxin Inhibitor Types that Differentially Affect Catalytic and Non-Catalytic Functions.

The domain architecture of the protozoan protein J-DNA-binding protein 1 suggests synergy between base J DNA binding and thymidine hydroxylase activity.

Crystal structure of the tubulin tyrosine carboxypeptidase complex VASH1-SVBP.

Building and rebuilding N-glycans in protein structure models.

A crystal structure of the human protein kinase Mps1 reveals an ordered conformation of the activation loop.

West-Life: A Virtual Research Environment for structural biology.

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Targeting the Main Protease (M^pro, nsp5) by Growth of Fragment Scaffolds Exploiting Structure-Based Methodologies.

Autotaxin impedes anti-tumor immunity by suppressing chemotaxis and tumor infiltration of CD8⁺ T cells.

Imaging Autotaxin In Vivo with ¹⁸F-Labeled Positron Emission Tomography Ligands.

CCD²: design constructs for protein expression, the easy way.