Publications

Genes & development

Cohesin-mediated loop extrusion and enhancer-associated factors additively contribute to Sox2 looping with its distal enhancer.

01-06-2026

Trends in genetics : TIG

Gene expression noise in development: genome-wide dynamics.

01-03-2026

Journal of molecular biology

Imaging the Central Dogma of Molecular Biology: Single Molecules to Single Cells.

01-01-2026

Biophysical journal

Long-read nucleosome mapping of single chromatin fibers using DNA methylation and nanopore sequencing.

02-12-2025

Science advances

Transcription processes compete with loop extrusion to homogenize promoter and enhancer dynamics.

13-12-2024

Current opinion in genetics & development

Better together: how cooperativity influences transcriptional bursting.

01-12-2024

Nature communications

Single gene analysis in yeast suggests nonequilibrium regulatory dynamics for transcription.

23-07-2024

Nature reviews. Molecular cell biology

Seeing transcription in real time.

01-06-2024

Molecular cell

Transcription factor exchange enables prolonged transcriptional bursts.

21-03-2024

Trends in genetics : TIG

Time will tell: comparing timescales to gain insight into transcriptional bursting.

01-02-2024

Molecular cell

Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly.

07-12-2023

Methods in molecular biology (Clifton, N.J.)

Measuring Transcription Dynamics of Individual Genes Inside Living Cells.

12-10-2023

Research square

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics.

16-08-2023

Nucleic acids research

Transcription factor clusters enable target search but do not contribute to target gene activation.

23-06-2023

Molecular cell

DNA supercoiling restricts the transcriptional bursting of neighboring eukaryotic genes.

18-05-2023

Nature structural & molecular biology

Dynamic epistasis analysis reveals how chromatin remodeling regulates transcriptional bursting.

01-05-2023

bioRxiv : the preprint server for biology

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics.

26-04-2023

eLife

Quantifying how post-transcriptional noise and gene copy number variation bias transcriptional parameter inference from mRNA distributions.

17-10-2022

Genes & development

Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus.

01-06-2022

Biophysical journal

Following the tracks: How transcription factor binding dynamics control transcription.

03-05-2022

Nucleic acids research

Transcription-replication coordination revealed in single live cells.

28-02-2022

The EMBO journal

The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency.

01-12-2021

STAR protocols

Optimized protocol for single-molecule RNA FISH to visualize gene expression in S. cerevisiae.

17-09-2021

STAR protocols

Single-Molecule Fluorescence Imaging in Living Saccharomyces cerevisiae Cells.

18-12-2020

Molecular cell

RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting.

16-07-2020

Current opinion in chemical biology

Visualizing transcription: key to understanding gene expression dynamics.

01-08-2019

The EMBO journal

Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting.

17-06-2019

Nucleic acids research

Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism.

30-11-2018

PLoS genetics

A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover.

01-10-2011

Epigenetics & chromatin

Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms.

03-02-2011

Cohesin-mediated loop extrusion and enhancer-associated factors additively contribute to Sox2 looping with its distal enhancer.

Gene expression noise in development: genome-wide dynamics.

Imaging the Central Dogma of Molecular Biology: Single Molecules to Single Cells.

Long-read nucleosome mapping of single chromatin fibers using DNA methylation and nanopore sequencing.

Transcription processes compete with loop extrusion to homogenize promoter and enhancer dynamics.

Better together: how cooperativity influences transcriptional bursting.

Single gene analysis in yeast suggests nonequilibrium regulatory dynamics for transcription.

Seeing transcription in real time.

Transcription factor exchange enables prolonged transcriptional bursts.

Time will tell: comparing timescales to gain insight into transcriptional bursting.

Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly.

Measuring Transcription Dynamics of Individual Genes Inside Living Cells.

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics.

Transcription factor clusters enable target search but do not contribute to target gene activation.

DNA supercoiling restricts the transcriptional bursting of neighboring eukaryotic genes.

Dynamic epistasis analysis reveals how chromatin remodeling regulates transcriptional bursting.

Competition between transcription and loop extrusion modulates promoter and enhancer dynamics.

Quantifying how post-transcriptional noise and gene copy number variation bias transcriptional parameter inference from mRNA distributions.

Transcriptional regulation and chromatin architecture maintenance are decoupled functions at the Sox2 locus.

Following the tracks: How transcription factor binding dynamics control transcription.

Transcription-replication coordination revealed in single live cells.

The Hda1 histone deacetylase limits divergent non-coding transcription and restricts transcription initiation frequency.

Optimized protocol for single-molecule RNA FISH to visualize gene expression in S. cerevisiae.

Single-Molecule Fluorescence Imaging in Living Saccharomyces cerevisiae Cells.

RNA Pol II Length and Disorder Enable Cooperative Scaling of Transcriptional Bursting.

Visualizing transcription: key to understanding gene expression dynamics.

Live-cell imaging reveals the interplay between transcription factors, nucleosomes, and bursting.

Dot1 promotes H2B ubiquitination by a methyltransferase-independent mechanism.

A barcode screen for epigenetic regulators reveals a role for the NuB4/HAT-B histone acetyltransferase complex in histone turnover.

Dot1 binding induces chromatin rearrangements by histone methylation-dependent and -independent mechanisms.

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