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A comprehensive enhancer screen identifies TRAM2 as a key and novel mediator of YAP oncogenesis.

Li Li ,
Alejandro P Ugalde ,
Colinda L G J Scheele ,
Sebastian M Dieter ,
Remco Nagel ,
Jin Ma ,
Abhijeet Pataskar ,
Gozde Korkmaz ,
Ran Elkon ,
Miao-Ping Chien ,
Li You ,
Pin-Rui Su ,
Onno B Bleijerveld ,
Maarten Altelaar ,
Lyubomir Momchev ,
Zohar Manber ,
Ruiqi Han ,
Pieter C van Breugel ,
Rui Lopes ,
Peter Ten Dijke ,
Jacco van Rheenen ,
Reuven Agami

Abstract

CONCLUSIONS

YAP is a transcription co-factor that binds to thousands of enhancer loci and stimulates tumor aggressiveness. Using unbiased functional approaches, we dissect YAP enhancer network and characterize TRAM2 as a novel mediator of cellular proliferation, migration, and invasion. Our findings elucidate how YAP induces cancer aggressiveness and may assist diagnosis of cancer metastasis.

RESULTS

We first apply genome-wide ChIP profiling of YAP to systematically identify enhancers that are bound by YAP/TEAD4. Next, we implement a genetic approach to uncover functions of YAP/TEAD4-associated enhancers, demonstrate its robustness, and use it to reveal a network of enhancers required for YAP-mediated proliferation. We focus on EnhancerTRAM2, as its target gene TRAM2 shows the strongest expression-correlation with YAP activity in nearly all tumor types. Interestingly, TRAM2 phenocopies the YAP-induced cell proliferation, migration, and invasion phenotypes and correlates with poor patient survival. Mechanistically, we identify FSTL-1 as a major direct client of TRAM2 that is involved in these phenotypes. Thus, TRAM2 is a key novel mediator of YAP-induced oncogenic proliferation and cellular invasiveness.

BACKGROUND

Frequent activation of the co-transcriptional factor YAP is observed in a large number of solid tumors. Activated YAP associates with enhancer loci via TEAD4-DNA-binding protein and stimulates cancer aggressiveness. Although thousands of YAP/TEAD4 binding-sites are annotated, their functional importance is unknown. Here, we aim at further identification of enhancer elements that are required for YAP functions.

More about this publication

Genome biology

Volume 22
Issue nr. 1
Pages 54
Publication date 29-01-2021

Full text links

Publisher website (DOI) 10.1186/s13059-021-02272-8
Europe PubMed Central 33514403
Pubmed 33514403

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