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Towards error-free profiling of immune repertoires.

Mikhail Shugay ,
Olga V Britanova ,
Ekaterina M Merzlyak ,
Maria A Turchaninova ,
Ilgar Z Mamedov ,
Timur R Tuganbaev ,
Dmitriy A Bolotin ,
Dmitry B Staroverov ,
Ekaterina V Putintseva ,
Karla Plevova ,
Carsten Linnemann ,
Dmitriy Shagin ,
Sarka Pospisilova ,
Sergey Lukyanov ,
Ton N Schumacher ,
Dmitriy M Chudakov

Abstract

Deep profiling of antibody and T cell-receptor repertoires by means of high-throughput sequencing has become an attractive approach for adaptive immunity studies, but its power is substantially compromised by the accumulation of PCR and sequencing errors. Here we report MIGEC (molecular identifier groups-based error correction), a strategy for high-throughput sequencing data analysis. MIGEC allows for nearly absolute error correction while fully preserving the natural diversity of complex immune repertoires.

More about this publication

Nature methods

Volume 11
Issue nr. 6
Pages 653-5
Publication date 01-06-2014

Full text links

Publisher website (DOI) 10.1038/nmeth.2960
Europe PubMed Central 24793455
Pubmed 24793455

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