Publications

BMC Bioinformatics

Analysing multiple types of molecular profiles simultaneously: connecting the needles in the haystack

09-02-2016

Key

European radiology

Artificial intelligence-assisted double reading of chest radiographs to detect clinically relevant missed findings: a two-centre evaluation.

11-03-2024

BMC bioinformatics

A new approach to describe the taxonomic structure of microbiome and its application to assess the relationship between microbial niches.

05-02-2024

Research square

Artificial intelligence-based morphometric signature to identify ductal carcinoma in situ with low risk of progression to invasive breast cancer.

13-12-2023

Molecular cell

Locus-specific proteome decoding reveals Fpt1 as a chromatin-associated negative regulator of RNA polymerase III assembly.

07-12-2023

Journal of dental research

Microbial Indicators of Dental Health, Dysbiosis, and Early Childhood Caries.

01-07-2023

Cancer cell

Taxanes trigger cancer cell killing in vivo by inducing non-canonical T cell cytotoxicity.

12-06-2023

Radiology. Cardiothoracic imaging

Artificial Intelligence Tool for Detection and Worklist Prioritization Reduces Time to Diagnosis of Incidental Pulmonary Embolism at CT.

01-04-2023

BMC bioinformatics

ShrinkCRISPR: a flexible method for differential fitness analysis of CRISPR-Cas9 screen data.

03-02-2023

Communications biology

Genome-wide siRNA screens identify RBBP9 function as a potential target in Fanconi anaemia-deficient head-and-neck squamous cell carcinoma.

13-01-2023

Biometrical journal. Biometrische Zeitschrift

A powerful global test for spliceQTL effects.

01-01-2023

Sensors (Basel, Switzerland)

Electronic Nose Sensor Drift Affects Diagnostic Reliability and Accuracy of Disease-Specific Algorithms.

28-11-2022

Frontiers in genetics

Editorial: Advancement in Gene Set Analysis: Gaining Insight From High-Throughput Data.

18-06-2022

International journal of molecular sciences

Functional Screen for microRNAs Suppressing Anchorage-Independent Growth in Human Cervical Cancer Cells.

26-04-2022

Frontiers in immunology

Distinct Patterns of Myeloid Cell Infiltration in Patients With hrHPV-Positive and hrHPV-Negative Penile Squamous Cell Carcinoma: The Importance of Assessing Myeloid Cell Densities Within the Spatial Context of the Tumor.

02-07-2021

Cancer research

Delta-Like Ligand-Notch1 Signaling Is Selectively Modulated by HPV16 E6 to Promote Squamous Cell Proliferation and Correlates with Cervical Cancer Prognosis.

01-04-2021

eLife

Loss of FLCN-FNIP1/2 induces a non-canonical interferon response in human renal tubular epithelial cells.

18-01-2021

Nature communications

A cancer drug atlas enables synergistic targeting of independent drug vulnerabilities.

10-06-2020

Biosensors

Fecal Volatile Organic Compound Profiles are Not Influenced by Gestational Age and Mode of Delivery: A Longitudinal Multicenter Cohort Study.

11-05-2020

Molecular cancer therapeutics

Functional Genomic Screen in Mesothelioma Reveals that Loss of Function of BRCA1-Associated Protein 1 Induces Chemoresistance to Ribonucleotide Reductase Inhibition.

01-02-2020

Oncogene

High-throughput RNAi screening reveals cancer-selective lethal targets in the RNA spliceosome.

01-05-2019

Head & neck

HLA class II expression on tumor cells and low numbers of tumor-associated macrophages predict clinical outcome in oropharyngeal cancer.

01-02-2019

BMC Bioinformatics

Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection

20-08-2018

BMC bioinformatics

Rscreenorm: normalization of CRISPR and siRNA screen data for more reproducible hit selection.

20-08-2018

PLOS one

Improving stability of prediction models based on correlated omics data by using network approaches

20-02-2018

Scientific reports

A CDC42-centered signaling unit is a dominant positive regulator of endothelial integrity.

31-08-2017

Molecular oncology

A genome-wide siRNA screen for regulators of tumor suppressor p53 activity in human non-small cell lung cancer cells identifies components of the RNA splicing machinery as targets for anticancer treatment.

01-05-2017

Autophagy

Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition).

23-01-2016

PloS one

Oncogenic Role of miR-15a-3p in 13q Amplicon-Driven Colorectal Adenoma-to-Carcinoma Progression.

07-07-2015

Radiation oncology (London, England)

A cell-based high-throughput screening assay for radiation susceptibility using automated cell counting.

27-02-2015

Stat Appl Genet Mol Biol.

General power and sample size calculations for high-dimensional genomic data

12-08-2013

Nucleic Acids Res.

Integrated analysis of microRNA and mRNA expression: adding biological significance to microRNA target predictions

14-06-2013

BMC Bioinformatics

Filtering, FDR and power

07-09-2010